Difference between revisions of "Sara Richardson"
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I enjoy the beach, soccer, and my 'spectrum'. | I enjoy the beach, soccer, and my 'spectrum'. | ||
| − | [[Image: | + | [[Image:SaraBeach.jpg]] |
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== Progress == | == Progress == | ||
| − | Updated: | + | Updated: August 31, 10:15 |
=== Week 1 === | === Week 1 === | ||
| Line 62: | Line 62: | ||
Completed "Research Presentation I" Power Point | Completed "Research Presentation I" Power Point | ||
| − | + | Attended: "Yellow Stickers" Presentations | |
| + | |||
| + | Presented: "Research Presentation I" research update | ||
CAMERAVis Plug-in: Rendered code varying parameters on OpenCover | CAMERAVis Plug-in: Rendered code varying parameters on OpenCover | ||
| Line 112: | Line 114: | ||
CAMERAVis Plug-in: Began working on intersection interactions | CAMERAVis Plug-in: Began working on intersection interactions | ||
| − | + | Attended: "GroZi Presentation" with Professor Serge Belongie | |
| + | CAMERAVis Plug-in: Tooltip working, displays location of data point moused over | ||
| + | [[Image:ToolTipScreenshot.png]] | ||
| + | |||
| + | ^ - - This image shows the Location ToolTip Displayed as You Mouse-Over a Data Point - - ^ | ||
| + | |||
| + | === Week 6 === | ||
| + | CAMERAVis Plug-in: Began working on a Hud to display all available data for a certain data point | ||
| + | |||
| + | Attended: "Green Stickers" Presentations | ||
| + | |||
| + | CAMERAVis Plug-in: Completed MetaData Hud, displayed when a data point is clicked | ||
| + | |||
| + | CAMERAVis Plug-in: Changed Legend to a Hud, takes up less space than as a menu and stays visible | ||
| + | |||
| + | [[Image:HudScreenshot.png]] | ||
| + | |||
| + | ^ - - This image shows the Metadata (bottom) and Legend (top) Huds - - ^ | ||
| + | |||
| + | CAMERAVis Plug-in: Changed ToolTip to display location name and value of variables being displayed | ||
| + | |||
| + | CAMERAVis Plug-in: Completed Poti for Display Size and Display Color menus to adjust range of values shown | ||
| + | |||
| + | [[Image:YesPotiScreenshot.png]] [[Image:NoPotiScreenshot.png]] | ||
| + | |||
| + | ^ - - Adjusted with Poti (left) vs. Without Poti (right), differences between points are more defined, ToolTip shows values of parameters displayed - - ^ | ||
| + | |||
| + | Attended: "Entrepreneurship" with Dr. Paul Kedrosky | ||
| + | |||
| + | |||
| + | === Week 7 === | ||
| + | Worked on "Research Presentation II" PowerPoint | ||
| + | |||
| + | Attended: SIGGRAPH Presentations - "Rage to Know", "Rhyme of Tang Dynasty", "Bibigi", "Imago", "Performing Arts for the Future Mobile Generation", "Dynamic Spaces", "AutoCosm", and "Takashi's Season" | ||
| + | |||
| + | CAMERAVis Plug-in: Changed plain blue Globe to a Textured Earth (yay!) | ||
| + | |||
| + | [[Image:TexturedEarthScreenshot.png]] | ||
| + | |||
| + | ^ - - Shows textured earth and all available options/features - - ^ | ||
| + | |||
| + | CAMERAVis Plug-in: Wrote code for future use in 'Calculating Statistics' | ||
| + | |||
| + | CAMERAVis Plug-in: Added a "Similar Values" feature. Select a data point, parameter, and range. Matches are colored, non-matches are white. | ||
| + | |||
| + | [[Image:SimilarValuesScreenshot.png]] | ||
| + | |||
| + | ^ - - Shows points within 3 degrees (range) of the temperature | ||
| + | |||
| + | (parameter) of the selected point in red, others in white- - ^ | ||
| + | |||
| + | Presented: "Research Presentation II" research update | ||
| + | |||
| + | Attended: "Yellow Stickers" Presentations | ||
| + | |||
| + | |||
| + | === Week 8 === | ||
| + | Attended: "CRCA and Calit2 Visualization Spaces Tour" | ||
| + | |||
| + | CAMERAVis Plug-in: Added 'Statistics' feature to select multiple spheres and display min/max/ave and commonalities | ||
| + | |||
| + | [[Image:StatisticsScreenshot.png]] | ||
| + | |||
| + | ^ - - Selected points highlighted in red, statistics window in upper right - - ^ | ||
| + | |||
| + | Received data for 142 additional GOS sites: siteID, location, latitude, longitude, date, time | ||
| + | |||
| + | CAMERAVis Plug-in: Placed new data sites on globe | ||
| + | |||
| + | [[Image:GOS1Screenshot.png]] [[Image:GOS2Screenshot.png]] [[Image:GOS3Screenshot.png]] [[Image:GOS4Screenshot.png]] | ||
| + | |||
| + | ^ - - Shows the location of all 196 sites in the GOS dataset, displayed around the globe - - ^ | ||
| + | |||
| + | Attended: "Blue Stickers" Presentations | ||
| + | |||
| + | CAMERAVis Plug-in: Adjusted Scaling - as scene is zoomed in on, points become smaller relative to globe but stay same size on screen | ||
| + | |||
| + | [[Image:GalapagosBigScreenshot.png]] [[Image:GalapagosScaledScreenshot.png]] | ||
| + | |||
| + | ^ - - (L) Sites are in a big, indistinguishable clump vs. (R) when closer, spheres separate to defined sites- - ^ | ||
| + | |||
| + | |||
| + | === Week 9 === | ||
| + | CAMERAVis Plug-in: Fixed location tool-tip size to adjust when moving/scaling so it stays visible yet unobtrusive on C-Wall | ||
| + | |||
| + | Attended: "Non-Engineering Career Paths" with Alexandra Hubenko-Baker | ||
| + | |||
| + | CAMERAVis Plug-in: CAMERAVis in the CAVE! - Globe needs work to be rendered, config file needs some values, but otherwise it ran well. | ||
| + | |||
| + | CAMERAVis Plug-in: Wrote a 'User-Guide' for the plug-in at [[CAMERA Meta-Data Visualization]]. | ||
| + | |||
| + | CAMERAVis Plug-in: Added pictures to the User-Guide | ||
| + | |||
| + | Attended: "Red Stickers" Presentations | ||
| + | |||
| + | CAMERAVis Plug-in: Changed certain variables to config values to aid with transitions between environments | ||
| + | |||
| + | Presented CAMERAVis Plug-in to Paul Gilna (CAMERA Director) and Tom DeFanti | ||
| + | |||
| + | CAMERAVis Plug-in: Changed C-Wall viewing options so that center of globe stays in place | ||
| + | |||
| + | Attended: UCSD Staff Picnic Volleyball Tournament | ||
| + | |||
| + | |||
| + | === Week 10 === | ||
| + | CAMERAVis Plug-in: Cleaned up, reorganized, and commented code in the cpp and header files | ||
| + | |||
| + | Attended: "Purple Stickers" Presentations | ||
| + | |||
| + | CAMERAVis Plug-in: Added additional options for the location tool-tip display, upon suggestion from P Gilna | ||
| + | |||
| + | [[Image: NewToolTipScreenshot.png]] | ||
| + | |||
| + | ^ - - This shows the location tip menu and all of the available options for display - - ^ | ||
| + | |||
| + | Calit2 Poster: Sketched some poster layouts to try, Wrote textual components for poster | ||
| + | |||
| + | Calit2 Poster: Took screenshots with enlarged text for poster readability | ||
| + | |||
| + | Calit2 Poster: Finished Poster using power point (30"x36" portrait). All black and white text with color pictures (brightened) | ||
| + | |||
| + | Attended: "Green Stickers" Presentations | ||
| + | |||
| + | CAMERAVis Plug-in: Changed HUDs (info window, legend, stats window) to Matrix Transforms from CameraNodes and made adjustments to resize and position them | ||
| + | |||
| + | CAMERAVis Plug-in: Made the HUDs moveable | ||
| + | |||
| + | Presented plug-in to Eric Allen, a biologist from SDSU to get his input and guidance for possible publication | ||
== Links == | == Links == | ||
| + | [[CAMERA Meta-Data Visualization]]: User Guide | ||
| + | |||
[http://camera.calit2.net/index.php Camera Portal] | [http://camera.calit2.net/index.php Camera Portal] | ||
Latest revision as of 15:50, 14 November 2007
Contents |
About Me
I am a second year UCSD Bioengineering student and a Calit2 Summer Undergraduate Research Scholar working with Jürgen Schulze.
I enjoy the beach, soccer, and my 'spectrum'.
You can usually find me on the 6th floor open space of Atkinson Hall.
I can be contacted at serichardson@ucsd.edu or 858-539-9950.
Project
After the success of the Human Genome Project, J. Craig Venter launched the Sorcerer II Global Ocean Sampling (GOS) Expedition to collect microbes and analyze their DNA sequences. Along with the microbial data, researchers also collected various metadata (location, depth, microbe size, temperature, salinity, pH, DO). This project will create a 3D visulazation of this metadata through the use of visualization technology. The display can then be used by researchers as a visually immersive way to look for particularly interesting data sites or relations between sites, with the ultimate goal of finding microbes with DNA that produce useful proteins.
This is the map of the GOS Expedition, indicating sample points. I am working on the visualization of metadata from the red/yellow points
Progress
Updated: August 31, 10:15
Week 1
Researched available information on GOS/CAMERA and related visualization
Found available GOS Metadata from CAMERA site.
^ - - This Image shows the text-file containing the GOS Metadata - - ^
Drafted initial ideas for visualization with the OssimPlanet software
Met with Paul Gilna to discuss ideas for and focus of the project
Began reading up on C++ programming language
Week 2
Continued reading about C++ programming language
Attended "How to Conduct Research" by Prof. Trey Ideker as a part of the Calit2 Scholars Colloquia Program
Began working on CAMERAVis plug-in for OpenCOVER (Progress noted as CAMERAVis Plug-in:)
CAMERAVis Plug-in: Parsed GOS data file, Converted latitude and longitude to cartesian coordinates
Attended "How to Present Research" by Martha Stacklin
CAMERAVis Plug-in: Rendered data points on a sphere (yay!)
^ - - This image shows the initial display of the globe and the GOS datapoints - - ^
CAMERAVis Plug-in: Wrote code representing variations in temperature/salinity as variations in the sphere's color/shape (values are accurate but opencover does not illustrate this)
Created first draft of "Research Presentation I" Power Point
Week 3
Completed "Research Presentation I" Power Point
Attended: "Yellow Stickers" Presentations
Presented: "Research Presentation I" research update
CAMERAVis Plug-in: Rendered code varying parameters on OpenCover
^ - - This image shows data points with temperature as color and salinity as size - - ^
Lunch with my associate/partner-in-crime
Attended: "Blue Stickers" Presentations
CAMERAVis Plug-in: Coding for Menu Items and Actions
Week 4
Attended: "How to Start a CAVE Plugin (Project)" with Tung-Ju Hsieh
Attended: "Applying to Graduate School" by Professors Bill Hodgkiss and Gert Lankreit
CAMERAVis Plug-in: Completed Menu in Opencover
^ - - This image shows the breakdown of the CAMERAVis menus currently coded - - ^
CAMERAVis Plug-in: Integrated Display of Both Size and Color through Menu (49 combinations currently available)
^ - - This image displays salinity as color and water depth as size, illustrated by the menu check-marks - - ^
CAMERAVis Plug-in: Added 3 Color Parameters (now utilizing over 10 colors)
CAMERAVis Plug-in: Implemented 3 Shape Parameters (280 different displays currently available)
Attended: "Red Stickers" Presentations
CAMERAVis Plug-in: Added Legend to Explain Visualizations w/in OpenCOVER (was displayed on terminal)
^ - - This image shows the legend explaining the displayed parameters - - ^
Week 5
Out Monday and Tuesday with illness
CAMERAVis Plug-in: Began working on intersection interactions
Attended: "GroZi Presentation" with Professor Serge Belongie
CAMERAVis Plug-in: Tooltip working, displays location of data point moused over
^ - - This image shows the Location ToolTip Displayed as You Mouse-Over a Data Point - - ^
Week 6
CAMERAVis Plug-in: Began working on a Hud to display all available data for a certain data point
Attended: "Green Stickers" Presentations
CAMERAVis Plug-in: Completed MetaData Hud, displayed when a data point is clicked
CAMERAVis Plug-in: Changed Legend to a Hud, takes up less space than as a menu and stays visible
^ - - This image shows the Metadata (bottom) and Legend (top) Huds - - ^
CAMERAVis Plug-in: Changed ToolTip to display location name and value of variables being displayed
CAMERAVis Plug-in: Completed Poti for Display Size and Display Color menus to adjust range of values shown
^ - - Adjusted with Poti (left) vs. Without Poti (right), differences between points are more defined, ToolTip shows values of parameters displayed - - ^
Attended: "Entrepreneurship" with Dr. Paul Kedrosky
Week 7
Worked on "Research Presentation II" PowerPoint
Attended: SIGGRAPH Presentations - "Rage to Know", "Rhyme of Tang Dynasty", "Bibigi", "Imago", "Performing Arts for the Future Mobile Generation", "Dynamic Spaces", "AutoCosm", and "Takashi's Season"
CAMERAVis Plug-in: Changed plain blue Globe to a Textured Earth (yay!)
^ - - Shows textured earth and all available options/features - - ^
CAMERAVis Plug-in: Wrote code for future use in 'Calculating Statistics'
CAMERAVis Plug-in: Added a "Similar Values" feature. Select a data point, parameter, and range. Matches are colored, non-matches are white.
^ - - Shows points within 3 degrees (range) of the temperature
(parameter) of the selected point in red, others in white- - ^
Presented: "Research Presentation II" research update
Attended: "Yellow Stickers" Presentations
Week 8
Attended: "CRCA and Calit2 Visualization Spaces Tour"
CAMERAVis Plug-in: Added 'Statistics' feature to select multiple spheres and display min/max/ave and commonalities
^ - - Selected points highlighted in red, statistics window in upper right - - ^
Received data for 142 additional GOS sites: siteID, location, latitude, longitude, date, time
CAMERAVis Plug-in: Placed new data sites on globe
^ - - Shows the location of all 196 sites in the GOS dataset, displayed around the globe - - ^
Attended: "Blue Stickers" Presentations
CAMERAVis Plug-in: Adjusted Scaling - as scene is zoomed in on, points become smaller relative to globe but stay same size on screen
^ - - (L) Sites are in a big, indistinguishable clump vs. (R) when closer, spheres separate to defined sites- - ^
Week 9
CAMERAVis Plug-in: Fixed location tool-tip size to adjust when moving/scaling so it stays visible yet unobtrusive on C-Wall
Attended: "Non-Engineering Career Paths" with Alexandra Hubenko-Baker
CAMERAVis Plug-in: CAMERAVis in the CAVE! - Globe needs work to be rendered, config file needs some values, but otherwise it ran well.
CAMERAVis Plug-in: Wrote a 'User-Guide' for the plug-in at CAMERA Meta-Data Visualization.
CAMERAVis Plug-in: Added pictures to the User-Guide
Attended: "Red Stickers" Presentations
CAMERAVis Plug-in: Changed certain variables to config values to aid with transitions between environments
Presented CAMERAVis Plug-in to Paul Gilna (CAMERA Director) and Tom DeFanti
CAMERAVis Plug-in: Changed C-Wall viewing options so that center of globe stays in place
Attended: UCSD Staff Picnic Volleyball Tournament
Week 10
CAMERAVis Plug-in: Cleaned up, reorganized, and commented code in the cpp and header files
Attended: "Purple Stickers" Presentations
CAMERAVis Plug-in: Added additional options for the location tool-tip display, upon suggestion from P Gilna
^ - - This shows the location tip menu and all of the available options for display - - ^
Calit2 Poster: Sketched some poster layouts to try, Wrote textual components for poster
Calit2 Poster: Took screenshots with enlarged text for poster readability
Calit2 Poster: Finished Poster using power point (30"x36" portrait). All black and white text with color pictures (brightened)
Attended: "Green Stickers" Presentations
CAMERAVis Plug-in: Changed HUDs (info window, legend, stats window) to Matrix Transforms from CameraNodes and made adjustments to resize and position them
CAMERAVis Plug-in: Made the HUDs moveable
Presented plug-in to Eric Allen, a biologist from SDSU to get his input and guidance for possible publication
Links
CAMERA Meta-Data Visualization: User Guide
PLoS Biology Publication of the GOS
